Node 71
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0	0	1	0	G	1
8	0	0	0	1	T	1
9	0.06	0	0.93	0	G	0.93
10	0	0.12	0	0.87	T	0.87
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0.01	0.91	0.06	0.02	C	0.91
16	1	0	0	0	A	1
17	0.39	0	0.61	0	G	0.61
18	0	1	0	0	C	1
19	0	0.83	0	0.17	C	0.83
20	0	0	0	1	T	1
21	0.98	0	0.02	0	A	0.98
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.03	0	0.97	0	G	0.97
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	1	0	0	C	1
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0.02	0.02	0.95	0.01	G	0.95
35	0.24	0.06	0.02	0.67	T	0.67
36	0.01	0	0.99	0	G	0.99
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.95	0	0.04	0.01	A	0.95
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.84	0	0.15	C	0.84
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.89	0	0.11	C	0.89
46	0.08	0	0.92	0	G	0.92
47	1	0	0	0	A	1
48	0	0.71	0	0.29	C	0.71
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.78	0	0.21	C	0.78
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.02	0	0.98	T	0.98
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.87	0	0.13	C	0.87
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.93	0	0.07	C	0.93
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0	0	1	T	1
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	0.23	0.13	0.61	0.02	G	0.61
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.09	0.41	0.43	0.06	G	0.43
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.01	0	0.99	0	G	0.99
83	1	0	0	0	A	1
84	0.38	0.45	0.05	0.11	C	0.45
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	1	0	0	C	1
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.92	0	0.08	C	0.92
91	0	0	1	0	G	1
92	0.05	0.91	0.04	0.01	C	0.91
93	0	0.98	0	0.02	C	0.98
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.04	0	0.96	T	0.96
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	1	0	0	0	A	1
101	1	0	0	0	A	1
102	0.99	0	0	0	A	0.99
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.14	0	0.85	T	0.85
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.37	0.01	0.61	0.01	G	0.61
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.97	0	0.03	C	0.97
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.03	0.77	0.15	0.06	C	0.77
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.78	0	0.21	C	0.78
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.94	0	0.06	C	0.94
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.21	0.01	0.77	0.01	G	0.77
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0.02	0	0.98	T	0.98
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.78	0	0.22	C	0.78
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.97	0	0.03	0	A	0.97
146	0	0	0	1	T	1
147	0	0.01	0	0.99	T	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.98	0	0.02	0	A	0.98
151	0	0	1	0	G	1
152	1	0	0	0	A	1
153	0	0.88	0	0.11	C	0.88
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.68	0	0.32	C	0.68
157	0.18	0	0.82	0	G	0.82
158	0	0.01	0	0.99	T	0.99
159	0	0.56	0	0.44	C	0.56
160	0.03	0	0.97	0	G	0.97
161	0	1	0	0	C	1
162	0.01	0.88	0.01	0.09	C	0.88
163	0.04	0.92	0.01	0.03	C	0.92
164	0.19	0	0.81	0	G	0.81
165	0.14	0.79	0.02	0.04	C	0.79
166	0.98	0	0.01	0	A	0.98
167	1	0	0	0	A	1
168	0.02	0.82	0.02	0.14	C	0.82
169	1	0	0	0	A	1
170	0	0.99	0.01	0.01	C	0.99
171	0	0.97	0	0.03	C	0.97
172	0	0	1	0	G	1
173	0.57	0.04	0.39	0.01	A	0.57
174	0.52	0.18	0.27	0.03	A	0.52
175	1	0	0	0	A	1
176	0.01	0.97	0	0.02	C	0.97
177	0	0.99	0	0.01	C	0.99
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.35	0	0.65	T	0.65
181	0.02	0	0.98	0	G	0.98
182	0.91	0.01	0.01	0.07	A	0.91
183	0.94	0.03	0.02	0.01	A	0.94
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.83	0	0.17	C	0.83
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.92	0	0.08	C	0.92
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.16	0	0.84	T	0.84
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.01	0	0.99	T	0.99
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.93	0	0.07	C	0.93
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	1	0	0	C	1
202	0.01	0	0.99	0	G	0.99
203	1	0	0	0	A	1
204	0	0.1	0	0.9	T	0.9
205	0.05	0	0.95	0	G	0.95
206	0	0	0	1	T	1
207	0	0.04	0.95	0	G	0.95
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.31	0	0.69	T	0.69
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0.8	0.11	0.06	C	0.8
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	0.98	0	0.02	0	A	0.98
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0.97	0	0.03	C	0.97
226	0	0.97	0.01	0.02	C	0.97
227	0	0	1	0	G	1
228	0	0.1	0	0.9	T	0.9
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0.01	0.92	0.02	0.05	C	0.92
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0.06	0.04	0.04	0.86	T	0.86
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0	0	1	0	G	1
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.95	0	0.05	C	0.95
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.29	0.09	0.6	T	0.6
247	0.06	0	0.93	0	G	0.93
248	0.99	0	0.01	0	A	0.99
249	0.02	0.83	0.01	0.13	C	0.83
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	0.7	0	0.3	0	A	0.7
253	0	0.04	0	0.96	T	0.96
254	0	0.99	0	0.01	C	0.99
255	0.16	0.66	0.03	0.15	C	0.66
256	0.04	0	0.95	0	G	0.95
257	0.96	0.01	0.02	0	A	0.96
258	0.19	0.17	0.59	0.05	G	0.59
259	0	1	0	0	C	1
260	0	0	0	1	T	1
261	0.08	0.07	0.08	0.78	T	0.78
262	0.07	0	0.92	0.01	G	0.92
263	0.89	0.06	0.04	0.01	A	0.89
264	0.07	0.85	0.03	0.04	C	0.85
265	0.34	0.22	0.41	0.03	G	0.41
266	0	0.07	0	0.93	T	0.93
267	0.08	0.4	0.23	0.28	C	0.4
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.06	0.01	0.92	0.02	G	0.92
271	0.02	0.09	0.89	0.01	G	0.89
272	1	0	0	0	A	1
273	0.21	0	0.79	0	G	0.79
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0	0.84	0	0.16	C	0.84
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.86	0	0.14	C	0.86
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.02	0.93	0	0.04	C	0.93
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.1	0	0.9	T	0.9
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.97	0	0.03	C	0.97
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.97	0	0.03	C	0.97
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.49	0	0.5	T	0.5
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.09	0	0.91	0	G	0.91
307	0	0.96	0	0.04	C	0.96
308	1	0	0	0	A	1
309	0.96	0.01	0.03	0.01	A	0.96
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.3	0	0.7	T	0.7
313	0.33	0.13	0.51	0.03	G	0.51
314	0.08	0.9	0	0.01	C	0.9
315	0.05	0.88	0.02	0.05	C	0.88
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.02	0.45	0.05	0.48	T	0.48
322	0	0.04	0.95	0	G	0.95
323	1	0	0	0	A	1
324	1	0	0	0	A	1
325	1	0	0	0	A	1
326	0	0.99	0	0.01	C	0.99
327	0.04	0.79	0.02	0.16	C	0.79
328	0	0.99	0	0.01	C	0.99
329	0	0	1	0	G	1
330	0	0.46	0	0.54	T	0.54
331	0	0	0.99	0	G	0.99
332	1	0	0	0	A	1
333	0.48	0	0.52	0	G	0.52
334	0	0.95	0	0.05	C	0.95
335	0	0	0	1	T	1
336	0.39	0.01	0.55	0.04	G	0.55
337	0	0.05	0	0.95	T	0.95
338	0.4	0	0.59	0	G	0.59
339	0	0.65	0	0.34	C	0.65
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.98	0.01	0.01	0	A	0.98
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.01	0.94	0.02	0.04	C	0.94
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.99	0	0	0	A	0.99
349	0	0	0.99	0	G	0.99
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	1	0	0	C	1
354	0.06	0.02	0.87	0.05	G	0.87
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0.01	0.99	T	0.99
360	0	0.11	0	0.89	T	0.89
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.09	0.8	0.02	0.09	C	0.8
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.06	0.78	0.11	0.05	C	0.78
368	1	0	0	0	A	1
369	0	0.96	0.01	0.03	C	0.96
370	0.99	0	0.01	0	A	0.99
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.04	0.1	0.83	0.03	G	0.83
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.94	0	0.06	C	0.94
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.95	0	0.04	C	0.95
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	1	0	0	C	1
385	0	0.99	0	0.01	C	0.99
386	0.99	0	0.01	0	A	0.99
387	0	0.99	0	0.01	C	0.99
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0	0.29	0	0.7	T	0.7
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.87	0	0.13	C	0.87
394	0.99	0	0.01	0	A	0.99
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0	0	1	0	G	1
399	0.14	0.01	0.84	0.01	G	0.84
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.95	0.01	0.04	0.01	A	0.95
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.73	0.25	0.01	0.01	A	0.73
410	0	0	1	0	G	1
411	0.76	0.16	0.04	0.04	A	0.76
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.87	0	0.13	0	A	0.87
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.02	0.06	0.91	0.01	G	0.91
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.02	0	0.98	0	G	0.98
424	1	0	0	0	A	1
425	0.99	0	0.01	0	A	0.99
426	0.98	0	0.02	0	A	0.98
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.04	0.06	0.88	0.02	G	0.88
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.97	0	0.03	C	0.97
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.94	0	0.06	C	0.94
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	0.99	0	0.01	0	A	0.99
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.99	0	0.01	C	0.99
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.99	0	0.01	C	0.99
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.92	0	0.08	C	0.92
452	0	0	0	1	T	1
453	0.3	0.07	0.38	0.25	G	0.38
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.8	0	0.2	C	0.8
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.02	0	0.98	0	G	0.98
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAGCCTAGAGCAATTCAAAGTGGTATACCGCGACGGCCGTAAATGGAACCGCTGTGTGGAAGCGATTGACAACATCGCCAATATCAAAGATGGCGTGATGCACTCCATCGGCGATTCGCTGGTTTACATGATTGAAGACGGCGTCGCCCGCAACACCGAAACCTTTGAAGGCAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCTGACAAATCCGAGCTTGACGTCGTGGAGGCCTACCGCGATGAAACCGACCGCGAATATCTGCAAGGTGCC---GGTGAAACCCGTGAGCTGTGCGAAGGCCAAGTGGCGATTTTTGACAACCACAAAGCGTACCGCTTCCACGGTGACAACCGGGTA------AGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTGAACAAGTAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAGCCTAGAGCAATTCAAAGTGGTATACCGCGACGGCCGTAAATGGAACCGCTGTGTGGAAGCGATTGACAACATCGCCAATATCAAAGATGGCGTGATGCACTCCATCGGCGATTCGCTGGTTTACATGATTGAAGACGGCGTCGCCCGCAACACCGAAACCTTTGAAGGCAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCTGACAAATCCGAGCTTGACGTCGTGGAGGCCTACCGCGATGAAACCGACCGCGAATATCTGCAAGGTGCCGGTGAAACCCGTGAGCTGTGCGAAGGCCAAGTGGCGATTTTTGACAACCACAAAGCGTACCGCTTCCACGGTGACAACCGGGTAAGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTGAACAAGTAA

The accuracy score for that sequence is 0.94719646799117

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.25049756511543e-13.
The natural log of that probability is -29.1224548771028.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	0.99	A	0	9999	
L	0.99	A	0	9999	
D	0.93	E	0.07	13.2857142857143	
S	0.61	N	0.39	1.56410256410256	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
V	0.6365	E	0.228	2.79166666666667	
V	1	A	0	9999	
Y	0.99	A	0	9999	
R	1	A	0	9999	
D	0.92	N	0.08	11.5	
G	0.99	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.99	A	0	9999	
E	1	A	0	9999	
A	0.99	R	0	9999	
I	1	A	0	9999	
D	0.5544	E	0.4257	1.30232558139535	Unreliable
N	1	A	0	9999	
I	1	A	0	9999	
A	0.91	D	0.05	18.2	
N	1	A	0	9999	
I	1	A	0	9999	
K	0.99	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	1.01	A	0	9999	
I	0.99	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
I	0.97	V	0.03	32.3333333333333	
E	1	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
V	0.8118	I	0.1782	4.55555555555556	
A	0.9603	T	0.0297	32.3333333333333	
R	0.742932	H	0.145084	5.12070248959224	
N	0.9408	K	0.0392	24	
T	0.99	I	0.01	99	
E	0.4503	G	0.39	1.15461538461538	Unreliable
T	0.97	I	0.02	48.5	
F	1	A	0	9999	
E	0.856128	V	0.0686	12.48	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	0.99	N	0.01	99	
V	0.9405	M	0.0475	19.8	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.99	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
R	0.97	C	0.02	48.5	
E	1	A	0	9999	
T	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
A	1	R	0	9999	
D	0.883872	N	0.057024	15.5	
K	1	A	0	9999	
S	0.9504	P	0.0396	24	
E	0.71136	D	0.20064	3.54545454545454	
L	1.01	A	0	9999	
D	0.728732	E	0.08188	8.9	
V	0.377487	I	0.240312	1.57082043343653	
V	1.01	A	0	9999	
E	0.89	Q	0.09	9.88888888888889	
A	1	R	0	9999	
Y	1	A	0	9999	
R	0.99	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	0.99	A	0	9999	
L	1	A	0	9999	
Q	0.9504	X	0.0396	24	
G	1	A	0	9999	
A	0.459	T	0.297	1.54545454545455	
	0	-	0	0
G	1	A	0	9999	
E	0.95	Q	0.04	23.75	
T	0.9999	I	0.0099	101	
R	0.99	C	0.01	99	
E	0.99	A	0	9999	
L	0.9875	F	0.0025	395	
C	0.554895	Y	0.3762	1.475	Unreliable
E	0.99	D	0.01	99	
G	1.01	A	0	9999	
Q	0.99	A	0	9999	
V	0.99	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
F	0.99	C	0.01	99	
D	0.89	E	0.11	8.09090909090909	
N	1	A	0	9999	
H	0.7722	D	0.1089	7.09090909090909	
K	0.99	E	0.01	99	
A	1	R	0	9999	
Y	1	A	0	9999	
R	0.99	A	0	9999	
F	1	A	0	9999	
H	0.9801	R	0.0099	99	
G	0.99	A	0	9999	
D	1	A	0	9999	
N	0.99	D	0.01	99	
R	1	A	0	9999	
V	1.01	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.834	S	0.146	5.71232876712329	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	0.99	R	0.01	99	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.9744	F	0.0256	38.0625	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLEQFKVVYRDGRKWNRCVEAIDNIANIKDGVMHSIGDSLVYMIEDGVARNTETFEGNRRYFDVHYYLEGRETVEFADKSELDVVEAYRDETDREYLQGA-GETRELCEGQVAIFDNHKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLEQFKVVYRDGRKWNRCVEAIDNIANIKDGVMHSIGDSLVYMIEDGVARNTETFEGNRRYFDVHYYLEGRETVEFADKSELDVVEAYRDETDREYLQGAGETRELCEGQVAIFDNHKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.959323880794702

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.000444721755335816
The natural log of that probability is -7.71806174026844.

